PEPperCHIP® Peptidoglycan Microarray

Profile antibody responses against bacterial peptidoglycan.


The PEPperCHIP® Peptidoglycan (PGN) Microarray is the first available tool to enable a high-throughput screening of antibody responses against 288 unique muropeptides, representing the most common amino acid variations of the peptide stem of bacterial cell walls with an N-terminal N-acetylmuramic acid (MucNAc). contains 288 different muropeptides printed in triplicate and enables the analysis of up to 16 samples per microarray. Moreover, the microarray contains FLAG positive control peptides.

The microarray can be used to:

  • Identify, profile, and compare PGN-specific IgG, IgA, and IgM responses in patient sera for vaccine development.
  • Compare contrast antibody responses to Gram-positive and Gram-negative muropeptide structures across bacterial species.
  • Correlate autoimmune diseases with antibody responses against bacterial muropeptides.

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Microarray information

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Microarray content: 288 unique muropeptides, representing the most common amino acid variations of the peptide stem of bacterial cell walls with an N-terminal N-acetylmuramic acid (MucNAc).

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Peptide characteristics: The peptide stem of muropeptides is made of three to five amino acids including a number of less common amino acids like D-glutamic acid, homoserine, D-alanine, diaminobutanoic acid or D-glutamine with glycine and other interbridges between the peptide units.

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Number of peptides / spots: 288 / 891 (peptidoglycans printed at least in triplicate)

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Positive control: FLAG (DDDK) control peptides (105 spots)

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Size and format: 3'' x 1'', 75.4 mm x 25.0 mm x 1.0 mm, containing 16 array copy per chip

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Accessories: compatible with 3/16 well PEPperCHIP® Incubation Tray

 

Sample information

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Can be assayed with at least 20 µL serum/plasma or 10-20 µg/mL purified antibody.

 

Estimated delivery time

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1-4 weeks for chip and optional add-on accessories

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6-8 weeks when requested with PEPperMAP® Services.

Documentation

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PEPperCHIP® Peptidoglycan Microarray Material Data Sheet [download pdf]

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PEPperCHIP® Peptidoglycan Microarray Peptide Map [download xlsx]

 

Learn how to perform the assay­­­

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PEPperCHIP® Immunoassay Protocol [download pdf] [watch video]

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PEPperCHIP® Immunoassay Quickstart Guide [download pdf]

 

Steps

Materials and equipment

We recommend

Immunoassay

Incubation tray

PEPperCHIP® Incubation Tray*

Orbital shaker

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Blocking reagents

BSA, or Rockland Blocking Buffer*

Control antibodies

PEPperCHIP® Control Antibodies

Buffers

PBS, Tween 20

Labelled secondary antibodies

Rockland secondary antibodies*

Data acquisition

Microarray scanner

Innopsys InnoScan® 710/710-IR*
LI-COR Odyssey® scanners*

See a list of compatible scanners

Data analysis

Fluorescence spot intensity quantification software

MAPIX Analyzer by Innopsys

Spreadsheet software

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*used in-house by PEPperPRINT

 

 

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PEPperCHIP® Peptidoglycan Microarray

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<s>For off-the-shelf products, see Standard chips and accessories checklist.xlsx for the product description that goes in this section.</s>

<s>475.00 EUR</s>

Excl. tax and shipping costs.

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