Publications

2017

Nunna V, Jalal N, Bureik M. Anti-CYP4Z1 autoantibodies detected in breast cancer patients. Cell Mol Immunol 2017;14(6):572–574. doi: 10.1038/cmi.2017.21 (Epub)

 

Qendro V, Lundgren DH, Palczewski S, Hegde P, Stevenson C, Perpetua L, Latifi A, Merriman J, Bugos G, Han DK. Discovery of breast putative cancer antigens using an integrative platform of genomics-driven immunoproteomics. Proteomics 2017; doi: 10.1002/pmic.201600318 (Epub)

 

Freire MCLC, Pol-Fachin L, Coêlho DF, Viana IFT, Magalhães T, Cordeiro MT, Fischer N, Loeffler FF, Jaenisch T, Franca RF, Marques ETA, Lins RD. Mapping Putative B-Cell Zika Virus NS1 Epitopes Provides Molecular Basis for Anti-NS1 Antibody Discrimination between Zika and Dengue Viruses. ACS Omega 2017; 2(7): 3913-3920. doi: 10.1021/acsomega.7b00608 (Epub)

 

Weber LK, Isse A, Rentschler S, Kneusel RE, Palermo A, Hubbuch J, Nesterov-Mueller A, Breitling F, Loeffler FF. Antibody Fingerprints in Lyme Disease Deciphered with High Density Peptide Arrays. Eng. Life Sci. 2017; doi:10.1002/elsc.201700062 (Epub)

 

Nixon CE, Park S, Pond-Tor S, Raj D, Lambert LE, Orr-Gonzales S, Barnafo EK, Friedman JF, Fried M, Duffy PE, Kurtis JD. Identification of protective B-cell epitopes within the novel malaria vaccine candidate P. falciparum Schizont Egress Antigen-1. Clin. Vaccine. Immunol. 2017; pii: CVI.00068-17. doi: 10.1128/CVI.00068-17 (Epub)

 

Gadermaier E, Tesarz M, Suciu AA-M, Wallwitz J, Berg G, Himmler G. Characterization of a sandwich ELISA for the quantification of all human periostin isoforms. J. Clin. Lab. Anal. 2017; 00: e22252. doi: 10.1002/jcla.22252 (Epub)

 

Ho M-H, Lamont RJ, Xie H. Identification of Streptococcus cristatus peptides that repress expression of virulence genes in Porphyromonas gingivalis. Sci. Rep. 2017; 7: 1413. doi: 10.1038/s41598-017-01551-4 (Epub)

 

Ridder B, Mattes DS, Nesterov-Mueller A, Breitling F, Meier MAR. Peptide array functionalization via the Ugi four-component reaction. Chem. Comm. 2017; 53. 5553-5556. doi: 10.1039/C7CC01945A (Epub)

 

Trausch JJ, Shank-Retzlaff M, Verch T. Replacing antibodies with modified DNA aptamers in vaccine potency assays. Vaccine 2017; doi: 10.1016/j.vaccine.2017.04.003 (Epub)

 

Cui X, Freed DC, Wang D, Qiu P, Li F, Fu TM, Kauvar LM, McVoy MA. Impact of antibodies and strain polymorphisms on cytomegalovirus entry and spread in fibroblasts and epithelial cells. J. Virol. 2017; doi: 10.1128/JVI.01650-16 (Epub)

 

Qendro V, Bugos GA, Lundgren DH, Glynn J, Han MH, Han DK. Integrative proteomics, genomics, and translational immunology approaches reveal mutated forms of Proteolipid Protein 1 (PLP1) and mutant-specific immune response in multiple sclerosis. Proteomics 2017; 17(6); doi: 10.1002/pmic.201600322 (Epub)

 

Weber LK, Palermo A, Kügler J, Armant O, Isse A, Rentschler S, Jaenisch T, Hubbuch J, Dübel S, Nesterov-Mueller A, Breitling F, Loeffler FF. Single amino acid fingerprinting of the human antibody repertoire with high density peptide arrays. J. Immunol. Meth. 2017; 443; 45–54 (Epub)

 

Jaks V, Uibo R. Autoantikehad täppismeditsiinis. Eesti Arst 2017; 96(2); 99–106 (Epub)

 

Lagatie O, Van Dorst B, Stuyver LJ. Identification of three immunodominant motifs with atypical isotype profile scattered over the Onchocerca volvulus proteome. PLoS Negl. Trop. Dis. 2017; 11(1); e0005330 (Epub)

 

 

2016

Gardner TJ, Stein KR, Duty JA, Schwarz TM, Noriega VM, Kraus T, Moran TM, Tortorella D. Functional screening for anti-CMV biologics identifies a broadly neutralizing epitope of an essential envelope protein. Nat. Commun. 2016; 7; 13627 (Epub)

 

Pashova S, Schneider C, von Gunten S, Pashov A. Antibody Repertoire Profiling with Mimotope Arrays. Hum. Vaccin. Immunother. 2016; doi: 10.1080/21645515.2017.1264786 (Epub)

 

Nixon CP, Prsic EH, Guertin CA, Stevenson RL, Sweeney JD. Acquired Factor XIII inhibitor associated with mantle cell lymphoma. Transfusion 2016; doi: 10.1111/trf.13947 (Epub)

 

Havenith H, Kern K, Rautenberger P, Spiegel H, Szardenings M, Ueberham E, Lehmann J, Buntru M, Vogel S, Treudler R, Fischer R, Schillberg S. Combination of two epitope identification techniques enables the rational design of soy allergen Gly m 4 mutants. Biotechnol. J. 2016; doi: 10.1002/biot.201600441 (Epub)

 

Reitsma M, Bastiaan-Net S, Sforza S, van der Valk JPM, van Gerth van Wijk∥ R, Savelkoul HFJ, de Jong NW, Wichers HJ. Purification and Characterization of Anacardium occidentale (Cashew) Allergens Ana o 1, Ana o 2, and Ana o 3. J. Agric. Food Chem. 2016; 64 (5): 1191–1201. doi: 10.1021/acs.jafc.5b04401 (Epub)

 

Didier A, Dietrich R, Märtlbauer E. Antibody Binding Studies Reveal Conformational Flexibility of the Bacillus cereus Non-Hemolytic Enterotoxin (Nhe) A-Component. PLoS ONE 2016; 13:e0165135. doi: 10.1371/journal.pone.0165135 (Epub)

 

Müller AM, Bockstahler M, Hristov G, Weiß C, Fischer A, Korkmaz-Icöz S, Giannitsis E, Poller W, Schultheiss HP, Katus HA, Kaya Z. Identification of novel antigens contributing to autoimmunity in cardiovascular diseases. Clinical Immunology 2016; in press. doi: 10.1016/j.clim.2016.09.003 (Epub)

 

Mayers J, Westcott D, Steinbach F. Identification of Equine arteritis virus immunodominant B cell epitopes using a peptide microarray. J Equine Vet Sci 2016;39:S13. doi: 10.1016/j.jevs.2016.02.028 (Epub)

 

Wang X, Wang Z, Xu H, Biao X, Yang Z. A single amino acid substitution alter antigenicity of glycosylated protein 4 of HP-PRRSV. Virology J 2016;13:129. doi: 10.1186/s12985-016-0586-3 (Epub)

 

Hallford P, St Clair D, Halleya L, Mustarda C, Wei J. A study of type-1 diabetes associated autoantibodies in schizophrenia. Schizophrenia Res 2016;176:186-190. doi: 10.1016/j.schres.2016.07.020 (Epub)

 

Maccari G, Genoni A,Sansonno S, Toniolo A. Properties of Two Enterovirus Antibodies that are Utilized in Diabetes Research. Sci Rep 2016;6:24757. doi: 10.1038/srep24757 (Epub)

 

Loeffler FF, Pfeil J, Heiss K. High-Density Peptide Arrays for Malaria Vaccine Development. Methods in Molecular Biology 2016;1403:569. doi: 10.1007/978-1-4939-3387-7_32 (Epub)

 

Metz I, Beißbarth T, Ellenberger D, Pache F, Stork L, Ringelstein M, Aktas O, Jarius S, Wildemann B, Dihazi H, Friede T, Brück W, Ruprecht K, Paul F. Serum peptide reactivities may distinguish neuromyelitis optica subgroups and multiple sclerosis. Neurol Neuroimmunol Neuroinflamm 2016; doi: 10.1212/NXI.0000000000000204 (Epub)


 

2015

Wang Y, Kapoor P, Parks R, Silva-Sanchez A, Alam SM, Verkoczy L, Liao HX, Zhuang Y, Burrows P, Levinson M, Elgavish A, Cui X, Haynes BF, Schroeder H Jr. HIV-1 gp140 epitope recognition is influenced by immunoglobulin DH gene segment sequence. Immunogenetics 2015; doi: 10.1007/s00251-015-0890-x (Epub)

 

Nominé Y, Choulier L, Travé G, Vernet T, Altschuh D. Antibody Binding Selectivity: Alternative Sets of Antigen Residues Entail High-Affinity Recognition. PLOS ONE 2015; doi: 10.1371/journal.pone.0143374 (Epub)

 

Mock A, Herold-Mende C. Non-invasive glioblastoma immunoprofiling by printed peptide arrays. OncoImmunology 2015; doi: 10.1080/2162402X.2015.1069941 (Epub)

 

Käsdorf BT, Arends F, Lieleg O. Diffusion Regulation in the Vitreous Humor. Biophys J 2015; doi: 10.1016/j.bpj.2015.10.002 (Epub)

 

Maselli A, Capoccia S, Pugliese P, Raggi C, Cirulli F, Fabi A, Malorni W, Pierdominici Marina, Ortona E. Autoantibodies specific to estrogen receptor alpha act as estrogen agonists and their levels correlate with breast cancer cell proliferation. OncoImmunology 2015; doi: 10.1080/2162402X.2015.1074375 (Epub)

 

Arends F, Sellner S, Seifert P, Gerland U, Rehberg M, Lieleg O. A microfluidics approach to study the accumulation of molecules at basal lamina interfaces. Lab Chip 2015; doi: 10.1039/c5lc00561b (Epub)


Tremante E, Lo Monaco E, Ingegnere T, Sampaoli C, Fraioli R, Giacomini P. Monoclonal antibodies to HLA-E bind epitopes carried by unfolded β2m-free heavy chains. Eur J Immunol 2015; doi: 10.1002/eji.201545446 (Epub)


Vernet T, Choulier L, Nominé Y, Bellard L, Baltzinger M, Travé G, Altschuh D. Spot peptide arrays and SPR measurements: throughput and quantification in antibody selectivity studies. J Mol Recognit 2015; doi: 10.1002/jmr.2477 (Epub)

 

Mock A, Warta R, Geisenberger C, Bischoff R, Schulte A, Lamszus K, Stadler V, Felgenhauer T, Schichor C, Schwartz C, Matschke J, Jungk C, Ahmadi R, Sahm F, Capper D, Glass R, Tonn JC, Westphal M, von Deimling A, Unterberg A, Bermejo JL, Herold-Mende C. Printed peptide arrays identify prognostic TNC serumantibodies in glioblastoma patients. Oncotarget 2015 (Epub ahead of print)

 

Hamilton JA, Li J, Wu Q, Yang P, Luo B, Li H, Bradley JE, Taylor JJ, Randall TD, Mountz JD, Hsu HC. General Approach for Tetramer-Based Identification of Autoantigen-Reactive B Cells: Characterization of La- and snRNP-Reactive B Cells in Autoimmune BXD2 Mice.J Immunol 2015; doi: 10.4049/jimmunol.1402335 (ePub)


 

2014

Vermeire K, Bell TW, Van Puyenbroeck V, Giraut A, Noppen S, Liekens S, Schols D, Hartmann E, Kalies KU, Marsh M. Signal Peptide-Binding Drug as a Selective Inhibitor of Co-Translational Protein Translocation. PLoS Biology 2014;12(12):e1002011. doi: 10.1155/2014/405956. (ePub)


Musset L, Miyara M, Benveniste O, Charuel JL, Shikhman A, Boyer O, Fowler R, Mammen A, Phillips J, Mahler M. Analysis of Autoantibodies to 3-Hydroxy-3-methylglutaryl-coenzyme A Reductase Using Different Technologies. J Immunol Res. 2014;2014:405956. doi: 10.1155/2014/405956. (ePub)


Borgwardt DS, Martin AD, Van Hemert JR, Yang J, Fischer CL, Recker EN, Nair PR, Vidva R, Chandrashekaraiah S, Progulske-Fox A, Drake D, Cavanaugh JE, Vali S, Zhang Y, Brogden KA. Histatin 5 binds to Porphyromonas gingivalis hemagglutinin B (HagB) and alters HagB-induced chemokine responses. Sci Rep 2014;4:3904 (ePub)

 

Wang X, Dang R, Liu W, Yang Z, Du E, Zhang S. Antigenic Characteristics of Glycosylated Protein 3 of Highly Pathogenic Porcine Reproductive and Respiratory Syndrome Virus. Virus Research. 2014;S0168-1702(14)00178-6. doi: 10.1016/j.virusres.2014.04.016 8 (ePub)

 

Grillberger R, Casina VC, Turecek PL, Zheng XL, Rottensteiner H, Scheiflinger F. Anti-ADAMTS13 IgG autoantibodies present in healthy individuals share linear epitopes with those in patients with thrombotic thrombocytopenic purpura. Haematologica. 2014;doi:10.3324/haematol.2013.100685 (ePub)

 

 

2013

Korkmaz S, Zitron E, Bangert A, Seyler C, Li S, Hegedüs P, Scherer D, Li J, Fink T, Schweizer PA, Giannitsis E, Karck M, Szabó G, Katus HA, Kaya Z. Provocation of an Autoimmune Response to Cardiac Voltage-Gated Sodium Channel NaV1.5 Induces Cardiac Conduction Defects in Rats. J Am Coll Cardiol. 2013 Jul 23;62(4):340-9. doi: 10.1016/j.jacc.2013.04.041. (ePub)

 

Schmidt R, Cook EA, Kastelic D, Taussig MJ, Stoevesandt O. Optimised ‘on demand’ protein arraying from DNA by cell free expression with the ‘DNA to Protein Array’ (DAPA) technology. J Proteomics. 2013 Aug 2;88:141-8. doi: 10.1016/j.jprot.2013.02.002. (ePub)

 

He X, Patfield S, Hnasko R, Rasooly R, Mandrell RE. A Polyclonal Antibody Based Immunoassay Detects Seven Subtypes of Shiga Toxin 2 Produced by Escherichia coli in Human and Environmental Samples. PLOS One 2013;8(10):e76368 (ePub)

 

Heilkenbrinker U, Dietrich R, Didier A, Zhu K, Lindbäck T, Granum PE, Märtlbauer E. Complex Formation between NheB and NheC Is Necessary to Induce Cytotoxic Activity by the Three-Component Bacillus cereus Nhe Enterotoxin. PLOS One. 2013;8(4):e63104 (ePub)

 

Schirwitz C, Loeffler FF, Felgenhauer T, Stadler V, Nesterov-Mueller A, Dahint R, Breitling F, Bischoff FR. Purification of High-Complexity Peptide Microarrays by Spatially Resolved Array Transfer to Gold-Coated Membranes. Adv Mater., 2013;25(11):1598-602 (PubMed)

 

 

2012

Schirwitz C, Loeffler FF, Felgenhauer T, Stadler V, Breitling F, Bischoff FR. Sensing immune responses with customized peptide microarrays. Biointerphases. 2012;7(1-4):47 (PubMed)


Shukla NM, Salunke DB, Balakrishna R, Mutz CA, Malladi SS, David SA. Potent Adjuvanticity of a Pure TLR7-Agonistic Imidazoquinoline Dendrimer. PLoS One. 2012;7(8):e43612 (PubMed)


Stafford P, Halperin R, Legutki JB, Magee DM, Galgiani J, Johnston SA. Physical characterization of the "immunosignaturing effect". Mol Cell Proteomics. 2012 Apr;11(4):M111.011593 (PubMed)

 

 

2011

Schmidt R, Jacak J, Schirwitz C, Stadler V, Michel G, Marmé N, Schütz GJ, Hoheisel JD, Knemeyer JP. Single-molecule detection on a protein-array assay platform for the exposure of a tuberculosis antigen. J Proteome Res. 2011 Mar 4;10(3):1316-22 (PubMed)

 

 

2010

Nesterov A, Dörsam E, Cheng YC, Schirwitz C, Märkle F, Löffler F, König K, Stadler V, Bischoff R, Breitling F. Peptide arrays with a chip. Methods Mol Biol. 2010;669:109-24 (PubMed)

 

 

2009

Schirwitz C, Block I, König K, Nesterov A, Fernandez S, Felgenhauer T, Leibe K, Torralba G, Hausmann M, Lindenstruth V, Stadler V, Breitling F, Bischoff FR. Combinatorial peptide synthesis on a microchip. Curr Protoc Protein Sci. 2009 Aug;Chapter 18:Unit 18.2 18.2.1-13 (PubMed)


Breitling F, Felgenhauer T, Nesterov A, Lindenstruth V, Stadler V, Bischoff FR. Particle-based synthesis of peptide arrays. Chembiochem. 2009 Mar 23;10(5):803-8 (PubMed)


Breitling F, Nesterov A, Stadler V, Felgenhauer T, Bischoff FR. High-density peptide arrays. Mol Biosyst. 2009 Mar;5(3):224-34 (PubMed)


Beyer M, Block I, König K, Nesterov A, Fernandez S, Felgenhauer T, Schirwitz C, Leibe K, Bischoff RF, Breitling F, Stadler V. A novel combinatorial approach to high-density peptide arrays. Methods Mol Biol. 2009;570:309-16 (PubMed)

 

 

2008

Stadler V, Felgenhauer T, Beyer M, Fernandez S, Leibe K, Güttler S, Gröning M, König K, Torralba G, Hausmann M, Lindenstruth V, Nesterov A, Block I, Pipkorn R, Poustka A, Bischoff FR, Breitling F. Combinatorial synthesis of peptide arrays with a laser printer. Angew Chem Int Ed Engl. 2008;47(37):7132-5 (PubMed)

 

 

2007

Beyer M, Nesterov A, Block I, König K, Felgenhauer T, Fernandez S, Leibe K, Torralba G, Hausmann M, Trunk U, Lindenstruth V, Bischoff FR, Stadler V, Breitling F. Combinatorial synthesis of peptide arrays onto a microchip. Science. 2007 Dec 21;318(5858):1888 (PubMed)


Stadler V, Beyer M, König K, Nesterov A, Torralba G, Lindenstruth V, Hausmann M, Bischoff FR, Breitling F. Multifunctional CMOS microchip coatings for protein and peptide arrays. J Proteome Res. 2007 Aug;6(8):3197-202 (PubMed)

 

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